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All functions

PCAdataplot()
Performs and plots the results of a PCA on omic data
RNAseqdata() print(<RNAseqdata>) plot(<RNAseqdata>)
Import, check and normalization and transformation of RNAseq data
Scenedesmus_metab Scenedesmus_apical
Concentration-response effect of triclosan in Scenedesmus vacuolatus
Zhou_kidney_pce
Dose-response kidney transcriptomic effect of Tetrachloroethylene in mouse
bmdboot() print(<bmdboot>) plot(<bmdboot>)
Computation of confidence interval on benchmark doses by bootstrap
bmdcalc() print(<bmdcalc>) plot(<bmdcalc>)
Computation of benchmark doses for responsive items
bmdfilter()
Filtering BMDs according to estimation quality
bmdplot()
BMD plot optionally with confidence intervals on BMD
bmdplotwithgradient()
BMD plot with color gradient
continuousanchoringdata() print(<continuousanchoringdata>) plot(<continuousanchoringdata>)
Import and check of continuous anchoring apical data
curvesplot()
Plot of fitted curves
drcfit() print(<drcfit>) plot(<drcfit>) plotfit2pdf()
Dose response modelling for responsive items
ecdfplotwithCI()
ECDF plot of a variable with given confidence intervals on this variable
ecdfquantileplot()
ECDF plot of a given quantile of a variable calculated by group
formatdata4DRomics()
Build an R object that can be used as data input in DRomics
itemselect() print(<itemselect>)
Selection of significantly responsive items
continuousomicdata() metabolomicdata() print(<continuousomicdata>) plot(<continuousomicdata>)
Import and check of continuous omic data (e.g. metabolomic data)
microarraydata() omicdata() print(<microarraydata>) plot(<microarraydata>)
Import, check and normalization of single-channel microarray data
selectgroups()
Selection of groups on which to focus
sensitivityplot()
Plot of a summary of BMD values per group of items
targetplot()
Dose-reponse plot for target items
trendplot()
Plot of the repartition of trends per group
zebraf
Transcriptomic dose-response to ionizing radiation in zebrafish with batch effect